JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C22orf23_chr22_37938050_37958601	0/0	t0005	1289	6	1	4	0	1	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0006	1289	3	0	0	3	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0007	1289	2	0	0	2	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0008	1289	2	0	0	2	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0009	1289	1	1	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0010	1289	1	1	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0011	1289	1	1	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0012	1304	1	1	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0013	1289	1	0	0	0	0	1	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0014	1289	1	0	0	1	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	t0015	1289	1	0	0	1	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf31_chr22_29053672_29066831	1/1	t0001	110	469	95	80	231	16	45	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	t0002	71	1	1	0	0	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	t0003	110	1	0	0	0	0	1	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	t0004	110	1	0	0	1	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf39_chr22_19435886_19452711	0/1	t0001	3403	105	9	28	41	6	20	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0002	3403	87	13	9	60	0	5	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	1/0	t0003	3403	62	13	13	31	3	1	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0004	3403	43	9	7	23	0	4	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0005	3403	30	29	1	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0006	3403	29	1	1	21	0	6	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0007	3401	19	0	6	12	1	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0008	3403	9	8	1	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0009	3403	9	0	0	9	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0010	3402	4	0	1	0	0	3	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0011	3403	3	3	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0012	3403	2	0	0	2	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0013	3403	2	0	2	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0014	3403	2	0	0	2	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0015	3403	1	1	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0016	3403	1	0	0	1	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0017	3403	1	1	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0018	3403	1	1	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0019	3401	1	0	1	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0020	3401	1	0	0	1	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0021	3403	1	0	1	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0022	3403	1	0	0	1	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0023	3403	1	0	0	1	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0024	3403	1	1	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0025	3403	1	0	0	1	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0026	3403	1	0	0	0	0	1	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0027	3403	1	0	1	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	t0028	3403	1	1	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf42_chr22_32144006_32164303	1/0	t0001	623	240	9	52	144	7	27	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/1	t0002	623	135	69	19	28	2	16	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	t0003	623	11	1	4	0	3	3	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	t0004	623	7	7	0	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	t0005	623	4	0	2	0	2	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	t0006	623	1	0	1	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C2CD2L_chr11_119102344_119123544	0/1	t0001	2687	136	47	40	31	9	8	copy fasta	C2CD2L	chr11	119102344	119123544