JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF391_chr6_27383759_27408908	0/0	t0026	2967	1	0	0	0	0	1	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0027	2967	1	1	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0028	2967	1	0	1	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	t0029	2966	1	0	0	0	0	1	copy fasta	ZNF391	chr6	27383759	27408908
ZNF394_chr7_99488240_99505281	1/1	t0001	478	363	88	57	158	14	44	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	t0002	478	6	6	0	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	t0003	478	1	0	0	1	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	t0004	478	1	0	0	1	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	t0005	478	1	0	1	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF395_chr8_28340590_28391460	0/0	t0001	3261	70	6	9	48	3	4	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0002	3260	63	10	12	29	3	9	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0003	3260	43	4	9	21	1	8	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/1	t0004	3260	40	4	2	29	2	2	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0005	3262	35	1	1	29	0	4	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	1/0	t0006	3256	13	11	1	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0007	3261	9	0	6	2	0	1	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0008	3259	9	0	2	6	0	1	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0009	3256	8	8	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0010	3262	7	1	1	5	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0011	3261	7	4	0	3	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0012	3261	5	0	5	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0013	3261	5	5	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0014	3259	5	0	2	2	1	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0015	3257	4	4	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0016	3262	3	3	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0017	3261	3	2	1	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0018	3259	3	0	1	2	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0019	3255	3	3	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0020	3260	2	2	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0021	3261	2	0	1	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0022	3256	2	0	0	2	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0023	3261	2	2	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0024	3256	2	2	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0025	3261	2	0	0	0	0	2	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0026	3262	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0027	3260	1	0	0	0	0	1	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0028	3261	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0029	3263	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0030	3261	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0031	3262	1	0	1	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0032	3257	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0033	3261	1	0	1	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0034	3261	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0035	3261	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0036	3261	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0037	3261	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0038	3261	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0039	3260	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0040	3261	1	0	0	0	0	1	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0041	3260	1	0	1	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460