JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF395_chr8_28340590_28391460	0/0	t0042	3261	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0043	3261	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0044	3257	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0045	3260	1	0	0	0	0	1	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0046	3260	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0047	3261	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0048	3260	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0049	3255	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0050	3260	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0051	3256	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0052	3260	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0053	3259	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	t0054	3260	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF396_chr18_35361694_35382337	1/0	t0001	2654	89	6	9	66	0	7	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/1	t0002	2664	72	4	20	32	4	11	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0003	2672	63	5	25	19	7	7	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0004	2668	36	1	3	31	1	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0005	2660	31	30	1	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0006	2676	17	2	3	7	0	5	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0007	2676	15	2	4	8	1	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0008	2668	15	5	0	10	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0009	2672	12	2	2	3	0	5	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0010	2668	10	10	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0011	2672	6	6	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0012	2668	5	3	0	1	1	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0013	2672	5	3	0	2	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0014	2672	4	4	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0015	2658	4	0	2	1	0	1	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0016	2672	3	3	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0017	2664	3	0	0	3	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0018	2672	2	0	1	0	0	1	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0019	2660	2	1	0	1	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0020	2672	2	2	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0021	2660	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0022	2660	1	0	0	1	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0023	2660	1	0	0	1	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0024	2664	1	0	0	1	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0025	2672	1	0	1	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0026	2668	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0027	2676	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0028	2680	1	0	0	0	0	1	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0029	2680	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0030	2651	1	0	1	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0031	2654	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0032	2664	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0033	2668	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	t0034	2664	1	0	0	1	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF397_chr18_35236034_35254808	0/0	t0001	3658	37	6	5	17	3	6	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0002	3653	36	0	5	30	1	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0003	3655	31	0	0	29	0	2	copy fasta	ZNF397	chr18	35236034	35254808