JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF397_chr18_35236034_35254808	0/0	t0004	3656	26	0	0	25	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0005	3655	22	5	9	4	2	2	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0006	3654	21	5	3	8	2	3	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0007	3659	21	0	2	15	0	4	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0008	3655	17	0	5	12	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0009	3653	15	4	3	3	1	4	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0010	3654	12	5	3	3	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/1	t0011	3656	9	6	1	0	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0012	3660	9	0	1	8	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0013	3653	8	2	3	3	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0014	3656	7	0	3	2	1	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0015	3649	7	4	1	0	0	2	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0016	3659	7	0	3	3	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0017	3654	7	4	1	0	0	2	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0018	3654	6	0	6	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0019	3657	6	0	0	6	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0020	3660	6	0	0	6	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0021	3654	6	2	0	3	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	1/0	t0022	3655	4	2	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0023	3655	4	2	0	1	1	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0024	3655	4	4	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0025	3654	4	0	0	4	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0026	3653	4	4	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0027	3649	3	3	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0028	3657	3	0	0	3	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0029	3656	3	1	0	2	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0030	3655	3	0	0	3	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0031	3656	3	1	0	2	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0032	3656	3	3	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0033	3652	3	0	2	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0034	3652	3	2	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0035	3657	2	0	1	0	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0036	3654	2	0	1	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0037	3655	2	2	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0038	3658	2	1	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0039	3655	2	2	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0040	3657	2	2	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0041	3655	2	2	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0042	3654	2	0	1	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0043	3653	2	0	1	0	1	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0044	3658	2	0	0	2	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0045	3657	2	1	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0046	3656	2	2	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0047	3661	2	1	0	0	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0048	3655	2	0	0	2	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0049	3655	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0050	3653	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0051	3652	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0052	3655	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0053	3656	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808