JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF397_chr18_35236034_35254808	0/0	t0054	3654	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0055	3654	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0056	3653	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0057	3674	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0058	3656	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0059	3655	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0060	3658	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0061	3656	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0062	3655	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0063	3657	1	0	0	0	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0064	3658	1	0	0	0	1	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0065	3654	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0066	3652	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0067	3655	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0068	3657	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0069	3654	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0070	3655	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0071	3657	1	0	0	0	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0072	3657	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0073	3656	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0074	3656	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0075	3657	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0076	3654	1	0	0	0	1	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0077	3656	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0078	3659	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0079	3653	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0080	3655	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0081	3656	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0082	3653	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0083	3655	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0084	3653	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0085	3653	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0086	3656	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0087	3656	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0088	3655	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0089	3658	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0090	3641	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0091	3654	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0092	3657	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0093	3655	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0094	3659	1	0	0	0	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0095	3660	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0096	3658	1	0	1	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0097	3655	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0098	3653	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0099	3658	1	0	0	1	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	t0100	3654	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF398_chr7_149142453_149188042	0/1	t0001	3528	153	13	40	65	8	26	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	1/0	t0002	3532	37	18	3	5	3	7	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0003	3533	32	17	12	0	1	2	copy fasta	ZNF398	chr7	149142453	149188042