JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF398_chr7_149142453_149188042	0/0	t0004	3533	26	6	5	14	1	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0005	3529	11	2	4	3	1	1	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0006	3533	9	9	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0007	3534	7	5	1	1	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0008	3536	6	6	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0009	3536	5	5	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0010	3535	3	3	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0011	3530	3	2	1	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0012	3530	3	1	2	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0013	3533	2	2	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0014	3532	2	0	2	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0015	3536	2	2	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0016	3532	1	1	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0017	3528	1	0	0	1	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0018	3533	1	1	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0019	3532	1	1	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0020	3532	1	1	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0021	3532	1	0	0	0	1	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0022	3534	1	0	0	1	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0023	3528	1	0	0	1	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0024	3529	1	0	1	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0025	3528	1	0	0	0	1	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0026	3536	1	1	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0027	3533	1	0	1	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	t0028	3528	1	0	0	1	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF3_chr7_100064973_100086723	1/1	t0001	1457	220	55	45	81	10	27	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0002	1458	147	9	20	89	6	23	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0003	1454	16	0	0	15	1	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0004	1458	10	9	1	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0005	1457	8	8	0	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0006	1457	5	0	4	0	1	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0007	1458	5	4	0	1	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0008	1458	2	2	0	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0009	1457	1	1	0	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0010	1457	1	1	0	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0011	1457	1	1	0	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0012	1457	1	0	0	1	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0013	1457	1	0	1	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0014	1457	1	0	0	1	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	t0015	1457	1	0	1	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF404_chr19_43867365_43888964	0/0	t0001	191	249	40	48	135	10	16	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	t0002	191	108	25	23	34	8	18	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	t0003	191	24	23	1	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	t0004	191	4	4	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	t0005	191	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF407_chr18_74592870_75070671	0/0	t0001	1325	32	16	8	5	2	1	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	1/0	t0002	1325	14	9	4	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/1	t0003	1325	13	1	7	3	0	1	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	t0004	1325	10	3	4	2	0	1	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	t0005	1324	5	4	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671