JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF407_chr18_74592870_75070671	0/0	t0006	1324	5	3	2	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	t0007	1325	4	3	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	t0008	1325	4	4	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	t0009	1325	2	2	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	t0010	1324	1	0	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	t0011	1325	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	t0012	1324	1	0	0	0	0	1	copy fasta	ZNF407	chr18	74592870	75070671
ZNF408_chr11_46696031_46710912	1/1	t0001	67	361	94	70	145	12	38	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	t0002	67	1	0	0	1	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF410_chr14_73881859_73937521	0/0	t0001	1187	248	46	46	110	10	36	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	1/1	t0002	1187	133	31	20	70	4	6	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0003	1187	5	4	1	0	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0004	1187	4	3	1	0	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0005	1187	4	4	0	0	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0006	1187	1	0	0	1	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0007	1187	1	1	0	0	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0008	1187	1	0	0	1	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0009	1198	1	1	0	0	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0010	1187	1	0	0	0	0	1	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	t0011	1187	1	0	0	0	0	1	copy fasta	ZNF410	chr14	73881859	73937521
ZNF414_chr19_8504678_8519167	0/0	t0001	1121	146	17	25	88	4	12	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	1/1	t0002	1135	132	15	41	46	8	20	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0003	1136	38	10	7	17	3	1	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0004	1135	22	21	1	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0005	1137	22	6	6	7	1	2	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0006	1136	14	1	2	9	0	2	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0007	1136	8	8	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0008	1136	5	0	0	5	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0009	1136	4	4	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0010	1119	3	3	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0011	1137	2	0	0	0	0	2	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0012	1122	2	0	0	2	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0013	1137	2	0	0	2	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0014	1135	2	2	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0015	1135	2	2	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0016	1135	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0017	1121	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0018	1135	1	0	1	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0019	1118	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0020	1136	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0021	1137	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0022	1121	1	0	0	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0023	1135	1	0	0	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0024	1119	1	0	1	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0025	1136	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0026	1135	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0027	1135	1	0	0	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0028	1135	1	0	0	0	0	1	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0029	1136	1	0	0	0	0	1	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0030	1137	1	0	0	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167