JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF414_chr19_8504678_8519167	0/0	t0031	1137	1	0	0	0	0	1	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0032	1135	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	t0033	1137	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF415_chr19_53102879_53137910	0/1	t0001	621	213	32	41	110	12	17	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	1/0	t0002	621	191	48	38	75	4	25	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	t0003	621	7	0	0	7	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	t0004	621	6	6	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	t0005	621	4	4	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	t0006	621	3	0	3	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	t0007	621	2	0	0	2	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	t0008	621	1	1	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	t0009	621	1	1	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF416_chr19_57566566_57583911	1/1	t0001	761	337	64	60	166	12	33	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0002	761	75	19	6	37	2	11	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0003	761	7	7	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0004	761	2	0	0	2	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0005	761	2	0	0	0	0	2	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0006	761	1	1	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0007	761	1	0	0	1	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0008	736	1	0	1	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0009	761	1	1	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	t0010	761	1	0	1	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF417_chr19_57900774_57921592	1/0	t0001	2958	71	2	16	38	1	13	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0002	2959	66	19	14	27	3	3	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0003	2960	46	17	5	22	0	2	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0004	2959	29	4	7	14	1	3	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0005	2975	24	6	3	13	2	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0006	2976	22	5	5	8	1	3	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0007	2959	17	1	7	5	2	2	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0008	2977	13	2	1	9	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0009	2960	9	0	2	4	1	2	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0010	2978	8	0	1	5	0	2	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0011	2960	7	4	1	2	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0012	2977	7	1	4	1	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0013	2976	6	0	0	4	0	2	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0014	2959	5	0	0	5	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0015	2961	4	1	1	1	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/1	t0016	2958	4	0	3	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0017	2958	4	4	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0018	2960	3	0	0	2	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0019	2958	3	0	0	0	3	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0020	2978	3	0	0	3	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0021	2959	2	0	0	2	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0022	2959	2	0	0	2	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0023	2962	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0024	2959	2	1	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0025	2958	2	0	0	2	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0026	2959	2	0	0	2	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0027	2957	2	0	1	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0028	2959	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592