JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF417_chr19_57900774_57921592	0/0	t0029	2960	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0030	2959	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0031	2969	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0032	2968	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0033	2959	2	0	0	2	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0034	2974	2	0	1	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0035	2969	2	0	2	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0036	2958	2	0	0	0	2	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0037	2978	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0038	2959	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0039	2961	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0040	2959	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0041	2960	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0042	2960	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0043	2961	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0044	2961	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0045	2957	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0046	2957	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0047	2959	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0048	2959	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0049	2960	1	0	0	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0050	2956	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0051	2956	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0052	2959	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0053	2961	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0054	2960	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0055	2959	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0056	2960	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0057	2959	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0058	2960	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0059	2970	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0060	2969	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0061	2969	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0062	2967	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0063	2977	1	0	0	0	1	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0064	2977	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0065	2980	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0066	2977	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0067	2978	1	0	0	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0068	2959	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0069	2960	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0070	2979	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0071	2984	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0072	2975	1	0	0	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0073	2975	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0074	2979	1	0	0	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0075	2982	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0076	2959	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0077	2971	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0078	2967	1	0	0	0	1	0	copy fasta	ZNF417	chr19	57900774	57921592