JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF417_chr19_57900774_57921592	0/0	t0079	2966	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0080	2967	1	0	0	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0081	2960	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0082	2961	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0083	2960	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0084	2959	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0085	2977	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0086	2975	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0087	2979	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0088	2959	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	t0089	2960	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF418_chr19_57916882_57940402	1/1	t0001	1696	291	67	50	132	12	28	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0002	1696	81	13	16	42	2	8	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0003	1696	9	0	0	7	1	1	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0004	1696	7	0	5	0	1	1	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0005	1696	5	4	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0006	1696	4	4	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0007	1696	3	0	2	0	1	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0008	1696	3	0	0	3	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0009	1696	2	2	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0010	1696	2	2	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0011	1696	2	0	0	2	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0012	1696	2	2	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0013	1696	2	0	0	1	1	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0014	1696	2	2	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0015	1696	1	0	0	0	0	1	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0016	1696	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0017	1696	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0018	1696	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0019	1696	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0020	1696	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0021	1696	1	0	0	0	0	1	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0022	1696	1	0	0	0	0	1	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0023	1696	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0024	1696	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0025	1696	1	0	0	0	0	1	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0026	1696	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	t0027	1696	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF419_chr19_57482750_57501098	0/0	t0001	2193	106	12	10	69	4	11	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0002	2193	57	8	19	16	5	9	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0003	2194	28	1	7	15	0	5	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0004	2209	23	4	5	11	1	2	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	1/0	t0005	2210	21	3	2	11	2	2	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0006	2204	19	6	1	10	0	2	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0007	2205	17	2	1	14	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0008	2194	15	3	3	9	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0009	2193	12	1	8	0	0	3	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0010	2208	10	1	1	5	1	2	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0011	2192	10	6	2	2	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	t0012	2192	8	2	4	1	0	1	copy fasta	ZNF419	chr19	57482750	57501098