JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2CD2L_chr11_119102344_119123544	0/0	t0002	2687	102	17	12	63	2	8	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0003	2687	63	5	5	37	1	15	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	1/0	t0004	2687	56	3	4	40	1	7	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0005	2687	9	0	1	8	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0006	2688	6	6	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0007	2687	3	1	0	2	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0008	2687	3	3	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0009	2687	3	3	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0010	2687	3	1	2	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0011	2687	2	0	2	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0012	2687	1	0	0	0	0	1	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0013	2687	1	0	0	0	1	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0014	2687	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0015	2687	1	0	0	0	0	1	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0016	2687	1	0	0	0	0	1	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0017	2687	1	0	0	0	0	1	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0018	2687	1	1	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0019	2687	1	1	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0020	2687	1	1	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0021	2687	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0022	2687	1	1	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	t0023	2687	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2_chr21_41880112_41959018	0/0	t0001	4382	65	8	16	33	0	8	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	1/0	t0002	4383	58	0	17	29	3	8	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0003	4382	51	1	9	33	1	7	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/1	t0004	4382	47	5	8	28	3	2	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0005	4382	43	34	6	0	0	3	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0006	4382	18	2	3	12	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0007	4382	16	1	2	6	4	3	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0008	4380	10	0	5	0	3	2	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0009	4383	9	8	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0010	4382	7	6	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0011	4382	7	0	0	7	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0012	4382	6	6	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0013	4382	3	1	1	0	1	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0014	4382	3	0	0	3	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0015	4382	3	3	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0016	4379	3	0	2	0	1	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0017	4381	3	3	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0018	4378	3	3	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0019	4382	2	0	0	0	0	2	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0020	4382	2	2	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0021	4383	2	1	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0022	4383	2	2	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0023	4383	2	0	0	0	2	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0024	4382	2	2	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0025	4383	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0026	4383	1	0	0	0	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0027	4381	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0028	4383	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018