JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF41_chrX_47440178_47488222	0/0	t0005	2660	3	3	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0006	2660	2	0	0	2	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0007	2660	2	2	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0008	2663	1	0	0	0	0	1	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0009	2659	1	0	0	1	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0010	2660	1	0	0	1	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0011	2660	1	0	0	0	0	1	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0012	2660	1	0	0	1	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0013	2660	1	1	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0014	2660	1	1	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	t0015	2660	1	0	1	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF420_chr19_37073433_37135368	1/0	t0001	1573	134	8	27	74	5	19	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0002	1569	44	17	3	12	1	11	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/1	t0003	1571	39	8	15	5	4	6	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0004	1571	38	13	10	14	0	1	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0005	1573	10	0	5	4	0	1	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0006	1572	9	9	0	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0007	1574	9	7	1	1	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0008	1574	7	7	0	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0009	1572	6	6	0	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0010	1571	5	3	2	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0011	1571	5	3	2	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0012	1573	3	0	1	0	2	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0013	1573	3	0	0	3	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0014	1532	3	0	0	3	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0015	1572	3	2	0	1	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0016	1572	2	0	0	2	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0017	1569	2	2	0	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0018	1532	1	0	0	1	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0019	1574	1	0	1	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0020	1571	1	0	1	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	t0021	1570	1	1	0	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF423_chr16_49482524_49861112	0/0	t0001	4091	44	4	13	18	2	7	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0002	4093	34	0	11	19	2	2	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0003	4091	13	12	1	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0004	4091	11	2	1	6	0	2	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0005	4091	10	8	1	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	1/0	t0006	4090	8	1	5	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0007	4092	7	0	1	5	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0008	4091	6	1	4	0	1	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0009	4090	5	4	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0010	4090	4	4	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0011	4090	4	0	0	2	2	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0012	4089	3	3	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0013	4091	3	3	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0014	4091	3	0	2	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0015	4093	2	0	0	2	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/1	t0016	4090	2	0	0	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0017	4091	2	0	2	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0018	4091	2	0	2	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112