JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF423_chr16_49482524_49861112	0/0	t0019	4091	2	2	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0020	4091	1	0	0	0	1	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0021	4091	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0022	4090	1	0	0	0	1	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0023	4091	1	0	0	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0024	4090	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0025	4090	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0026	4092	1	0	1	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0027	4090	1	0	1	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0028	4090	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0029	4090	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0030	4090	1	0	0	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0031	4091	1	0	0	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0032	4091	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0033	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0034	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0035	4093	1	0	0	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0036	4093	1	0	0	0	1	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0037	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0038	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0039	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0040	4093	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0041	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0042	4093	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0043	4091	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0044	4091	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0045	4091	1	0	1	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0046	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0047	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0048	4091	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0049	4091	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	t0050	4091	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF425_chr7_149097784_149131324	0/1	t0001	940	246	46	48	105	14	32	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	1/0	t0002	940	42	21	15	1	2	2	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	t0003	940	9	9	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	t0004	940	7	7	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	t0005	940	5	4	1	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	t0006	940	4	4	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	t0007	940	3	3	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	t0008	940	3	3	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	t0009	940	1	1	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF426_chr19_9518223_9543645	1/0	t0001	5440	111	11	27	58	2	12	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0002	5441	78	7	20	37	6	8	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/1	t0003	5442	38	4	2	26	2	3	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0004	5441	14	0	0	12	0	2	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0005	5443	10	0	4	2	0	4	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0006	5441	10	0	0	10	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0007	5433	10	0	9	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0008	5424	8	8	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0009	5439	7	1	0	5	1	0	copy fasta	ZNF426	chr19	9518223	9543645