JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF426_chr19_9518223_9543645	0/0	t0010	5427	7	7	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0011	5427	7	7	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0012	5433	6	0	4	0	0	2	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0013	5433	6	6	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0014	5441	5	5	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0015	5435	5	5	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0016	5441	4	4	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0017	5440	4	0	1	1	2	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0018	5442	3	0	0	0	1	2	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0019	5440	3	0	0	3	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0020	5441	3	1	2	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0021	5440	3	3	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0022	5440	3	0	0	3	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0023	5443	3	0	0	3	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0024	5439	3	0	0	0	0	3	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0025	5433	3	2	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0026	5443	3	0	0	3	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0027	5444	2	0	0	0	0	2	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0028	5440	2	0	0	2	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0029	5442	2	0	0	2	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0030	5440	2	0	1	0	1	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0031	5440	2	0	0	2	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0032	5441	2	2	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0033	5423	2	2	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0034	5443	2	2	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0035	5441	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0036	5442	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0037	5441	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0038	5440	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0039	5441	1	0	0	0	1	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0040	5442	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0041	5444	1	0	1	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0042	5434	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0043	5440	1	0	0	0	1	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0044	5440	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0045	5440	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0046	5428	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0047	5440	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0048	5440	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0049	5442	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0050	5442	1	0	0	0	1	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0051	5443	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0052	5442	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0053	5437	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0054	5434	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0055	5435	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0056	5442	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0057	5441	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0058	5442	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0059	5441	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645