JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF426_chr19_9518223_9543645	0/0	t0060	5442	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0061	5441	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0062	5441	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0063	5442	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0064	5433	1	0	1	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0065	5433	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0066	5421	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0067	5434	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0068	5433	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0069	5427	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0070	5425	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0071	5424	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0072	5427	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0073	5433	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0074	5433	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0075	5440	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0076	5441	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0077	5442	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0078	5442	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0079	5440	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0080	5440	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0081	5427	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0082	5427	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0083	5441	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0084	5440	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	t0085	5441	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF428_chr19_43602224_43624629	1/0	t0001	596	171	36	30	76	11	17	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/1	t0002	594	165	24	36	77	3	24	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0003	592	27	3	1	19	1	3	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0004	590	18	9	0	9	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0005	598	17	10	5	0	0	2	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0006	598	9	6	2	1	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0007	596	8	0	3	4	1	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0008	596	2	1	0	0	0	1	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0009	594	1	0	1	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0010	594	1	0	1	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0011	572	1	1	0	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0012	592	1	0	0	1	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0013	594	1	0	0	0	0	1	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0014	594	1	0	0	1	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0015	600	1	1	0	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0016	594	1	1	0	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	t0017	594	1	0	1	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF429_chr19_21500602_21545668	0/0	t0001	2763	83	18	10	42	5	8	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/1	t0002	2763	30	1	3	18	2	5	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0003	2764	9	0	1	8	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0004	2765	8	0	1	6	0	1	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0005	2762	7	2	1	4	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0006	2762	6	1	0	4	0	1	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0007	2764	5	0	1	3	0	1	copy fasta	ZNF429	chr19	21500602	21545668