JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF429_chr19_21500602_21545668	0/0	t0008	2765	5	0	0	5	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	1/0	t0009	2761	4	0	1	1	1	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0010	2762	4	4	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0011	2764	4	2	1	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0012	2760	4	4	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0013	2762	4	3	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0014	2762	3	2	1	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0015	2761	3	3	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0016	2762	3	3	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0017	2765	2	0	0	2	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0018	2764	2	0	1	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0019	2762	2	2	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0020	2761	2	2	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0021	2763	2	0	0	1	1	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0022	2764	2	0	0	1	0	1	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0023	2763	2	2	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0024	2765	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0025	2762	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0026	2763	1	0	0	0	1	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0027	2763	1	0	0	0	0	1	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0028	2763	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0029	2763	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0030	2763	1	0	1	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0031	2763	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0032	2763	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0033	2762	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0034	2796	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0035	2796	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0036	2761	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0037	2762	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0038	2761	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0039	2764	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0040	2763	1	0	0	0	0	1	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0041	2767	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0042	2764	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0043	2763	1	0	0	0	0	1	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0044	2766	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0045	2764	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0046	2762	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0047	2763	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0048	2760	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	t0049	2763	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF430_chr19_21015657_21065050	0/1	t0001	2172	168	19	42	60	10	36	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	1/0	t0002	2174	46	6	5	28	2	4	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0003	2174	37	35	2	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0004	2172	11	11	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0005	2172	10	1	5	0	2	2	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0006	2171	6	6	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0007	2173	3	0	0	2	0	1	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0008	2172	2	0	0	2	0	0	copy fasta	ZNF430	chr19	21015657	21065050