JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF430_chr19_21015657_21065050	0/0	t0009	2174	2	2	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0010	2172	2	1	0	0	0	1	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0011	2173	1	0	1	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0012	2173	1	0	0	1	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0013	2172	1	0	0	1	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0014	2172	1	0	0	1	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0015	2161	1	1	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0016	2173	1	0	1	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0017	2174	1	1	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0018	2174	1	0	1	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0019	2171	1	1	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0020	2172	1	0	0	1	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	t0021	2173	1	0	1	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF431_chr19_21137040_21201053	0/0	t0001	12146	73	5	15	38	4	11	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0002	12165	36	0	4	26	2	4	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0003	12151	17	15	2	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0004	12162	12	1	5	1	2	3	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0005	12165	11	2	6	0	2	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0006	12147	9	0	3	5	0	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0007	12165	5	0	0	5	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/1	t0008	12145	5	0	4	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0009	12160	4	3	0	0	0	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0010	12166	4	0	1	3	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0011	12165	4	0	3	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0012	12151	4	4	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0013	12168	4	4	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0014	12165	4	4	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0015	12166	3	0	0	3	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0016	12147	3	0	1	0	2	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0017	12146	3	0	0	3	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0018	12162	3	3	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0019	12166	3	2	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0020	12165	3	3	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0021	12165	3	3	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0022	12146	2	1	0	0	0	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0023	12151	2	2	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0024	12145	2	0	0	2	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0025	12163	2	2	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0026	12161	2	2	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0027	12161	2	0	1	0	1	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0028	12146	2	0	0	2	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0029	12168	2	2	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0030	12168	2	2	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0031	12168	2	1	0	0	0	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0032	12165	2	1	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0033	12163	2	0	2	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0034	12165	2	0	0	1	0	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0035	12165	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0036	12158	1	0	0	0	0	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0037	12160	1	0	0	0	0	1	copy fasta	ZNF431	chr19	21137040	21201053