JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF431_chr19_21137040_21201053	0/0	t0038	12162	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0039	12168	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0040	12146	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	1/0	t0041	12164	1	0	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0042	12151	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0043	12151	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0044	12162	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0045	12166	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0046	12165	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0047	12164	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0048	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0049	12147	1	0	0	0	0	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0050	12147	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0051	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0052	12145	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0053	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0054	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0055	12146	1	0	0	0	0	1	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0056	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0057	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0058	12151	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0059	12148	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0060	12151	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0061	12151	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0062	12163	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0063	12163	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0064	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0065	12162	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0066	12162	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0067	12162	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0068	12177	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0069	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0070	12145	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0071	12166	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0072	12165	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0073	12168	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0074	12165	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0075	12165	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0076	12168	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0077	12168	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0078	12165	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0079	12164	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0080	12167	1	0	0	0	1	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0081	12164	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0082	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0083	12161	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0084	12163	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0085	12146	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0086	12165	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0087	12151	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053