JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF431_chr19_21137040_21201053	0/0	t0088	12151	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	t0089	12166	1	1	0	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF432_chr19_52026378_52053838	1/1	t0001	2679	146	21	22	78	9	14	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0002	2680	69	0	9	54	0	6	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0003	2680	44	5	10	21	1	7	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0004	2680	24	10	9	3	0	2	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0005	2679	18	14	4	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0006	2680	17	3	3	2	4	5	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0007	2679	14	10	3	0	0	1	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0008	2681	13	0	0	13	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0009	2680	11	10	1	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0010	2681	7	0	3	3	0	1	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0011	2681	6	0	0	0	2	4	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0012	2679	6	6	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0013	2679	5	0	0	5	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0014	2679	5	4	1	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0015	2679	5	0	3	0	0	2	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0016	2680	4	4	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0017	2680	4	4	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0018	2679	4	0	3	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0019	2679	3	0	0	3	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0020	2679	2	0	0	2	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0021	2679	1	1	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0022	2679	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0023	2680	1	0	1	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0024	2680	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0025	2679	1	0	0	0	0	1	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0026	2680	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0027	2680	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0028	2680	1	0	0	0	0	1	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0029	2681	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0030	2680	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0031	2680	1	1	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0032	2679	1	1	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0033	2679	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0034	2679	1	0	0	0	0	1	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0035	2680	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0036	2681	1	1	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0037	2679	1	1	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0038	2679	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0039	2681	1	0	1	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0040	2680	1	0	0	0	0	1	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	t0041	2680	1	0	1	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF433_chr19_12009715_12040679	1/1	t0001	271	300	72	49	133	9	35	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	t0002	271	36	20	6	7	1	2	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	t0003	271	3	3	0	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	t0004	271	1	1	0	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	t0005	271	1	0	0	0	0	1	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	t0006	271	1	0	1	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF436_chr1_23354448_23374836	0/1	t0001	3053	167	19	37	90	7	13	copy fasta	ZNF436	chr1	23354448	23374836