JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF436_chr1_23354448_23374836	1/0	t0002	3053	84	37	13	23	4	6	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0003	3053	69	1	8	45	3	12	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0004	3053	29	3	8	15	2	1	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0005	3053	20	18	2	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0006	3053	3	3	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0007	3053	2	0	0	0	0	2	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0008	3053	2	2	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0009	3053	2	2	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0010	3053	1	1	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0011	3053	1	0	0	1	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0012	3053	1	0	0	0	0	1	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0013	3053	1	1	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0014	3053	1	0	1	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0015	3053	1	0	1	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0016	3053	1	1	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0017	3053	1	0	0	1	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0018	3053	1	0	0	1	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0019	3053	1	0	0	0	0	1	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0020	3053	1	1	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0021	3053	1	1	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0022	3053	1	0	0	1	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	t0023	3053	1	0	0	1	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF438_chr10_30839632_31036865	1/0	t0001	612	271	67	53	105	15	30	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/1	t0002	612	19	2	2	12	2	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0003	611	8	0	5	1	1	1	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0004	612	5	5	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0005	612	3	1	2	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0006	612	2	2	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0007	612	2	2	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0008	612	2	2	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0009	612	1	0	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0010	612	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0011	612	1	0	0	0	0	1	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	t0012	612	1	0	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF439_chr19_11843726_11874486	1/1	t0001	1060	264	72	53	99	8	30	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0002	1060	36	1	12	12	6	5	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0003	1060	6	3	2	0	0	1	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0004	1060	3	2	1	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0005	1060	3	3	0	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0006	1060	2	2	0	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0007	1060	2	2	0	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0008	1060	1	1	0	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0009	1060	1	0	1	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0010	1060	1	0	0	1	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	t0011	1060	1	0	1	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF43_chr19_21799946_21841182	0/1	t0001	2804	163	24	26	80	11	21	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0002	2803	44	7	17	14	2	4	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0003	2804	41	0	4	32	0	5	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0004	2802	31	0	0	28	0	3	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0005	2807	15	7	5	0	0	3	copy fasta	ZNF43	chr19	21799946	21841182