JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF43_chr19_21799946_21841182	0/0	t0006	2805	12	12	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0007	2804	8	7	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	1/0	t0008	2806	8	7	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0009	2802	7	3	3	0	1	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0010	2807	6	6	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0011	2804	4	3	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0012	2803	3	0	2	0	1	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0013	2803	3	0	1	2	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0014	2806	2	2	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0015	2805	2	1	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0016	2804	2	2	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0017	2806	2	2	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0018	2807	2	2	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0019	2804	2	2	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0020	2802	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0021	2802	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0022	2803	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0023	2803	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0024	2805	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0025	2805	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0026	2804	1	0	0	0	0	1	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0027	2804	1	0	0	0	1	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0028	2805	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0029	2804	1	0	0	0	0	1	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0030	2804	1	0	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0031	2805	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0032	2803	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0033	2803	1	0	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0034	2804	1	0	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0035	2801	1	0	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0036	2803	1	0	0	0	0	1	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0037	2805	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0038	2804	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0039	2804	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0040	2802	1	0	0	0	0	1	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0041	2807	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	t0042	2808	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF440_chr19_11809273_11840216	1/1	t0001	2428	173	10	42	89	10	20	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0002	2428	86	22	8	50	0	6	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0003	2430	47	27	10	1	4	5	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0004	2430	20	4	3	13	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0005	2430	19	0	6	10	0	3	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0006	2430	10	8	1	0	1	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0007	2430	2	1	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0008	2430	2	2	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0009	2428	2	2	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0010	2428	2	0	0	2	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0011	2430	2	2	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0012	2428	2	0	1	0	1	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0013	2430	1	0	0	0	0	1	copy fasta	ZNF440	chr19	11809273	11840216