JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2CD2_chr21_41880112_41959018	0/0	t0029	4382	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0030	4382	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0031	4382	1	0	0	0	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0032	4382	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0033	4380	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0034	4383	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0035	4384	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0036	4383	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0037	4382	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0038	4383	1	0	0	0	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0039	4382	1	0	0	0	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0040	4382	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0041	4382	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0042	4383	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0043	4382	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0044	4382	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0045	4382	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0046	4382	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0047	4382	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0048	4382	1	0	0	0	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0049	4379	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0050	4384	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0051	4383	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0052	4382	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	t0053	4382	1	0	0	0	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD3_chr11_74007718_74176002	1/1	t0001	878	303	85	47	123	12	34	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	t0002	878	9	9	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	t0003	878	3	0	1	0	2	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	t0004	878	2	2	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	t0005	878	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD4A_chr15_62061977_62075917	0/0	t0001	2336	180	35	28	93	10	14	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/1	t0002	2339	96	18	32	32	8	5	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0003	2339	73	5	10	50	0	8	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0004	2337	22	3	1	17	0	1	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0005	2339	8	3	3	0	0	2	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0006	2339	4	4	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0007	2342	4	4	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0008	2339	4	4	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0009	2336	3	1	0	0	0	2	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0010	2339	2	2	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0011	2339	2	2	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	1/0	t0012	2336	2	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0013	2336	1	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0014	2339	1	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0015	2339	1	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0016	2336	1	0	0	0	0	1	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0017	2339	1	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0018	2339	1	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0019	2342	1	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0020	2342	1	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917