JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF440_chr19_11809273_11840216	0/0	t0014	2430	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0015	2430	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0016	2430	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0017	2428	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0018	2428	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0019	2428	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0020	2428	1	0	0	0	0	1	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	t0021	2430	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF441_chr19_11762000_11789078	1/1	t0001	2367	175	13	46	89	8	17	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0002	2367	80	19	3	53	0	5	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0003	2367	71	31	19	10	3	8	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0004	2367	10	0	0	10	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0005	2367	8	3	1	0	0	4	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0006	2367	5	5	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0007	2367	5	0	0	5	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0008	2367	3	3	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0009	2367	3	2	1	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0010	2367	2	2	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0011	2367	2	2	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0012	2367	2	0	2	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0013	2367	2	0	0	2	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0014	2367	1	0	0	1	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0015	2367	1	0	0	1	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0016	2367	1	0	0	0	0	1	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0017	2367	1	0	0	1	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0018	2367	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0019	2367	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0020	2367	1	0	0	0	0	1	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0021	2367	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0022	2367	1	0	0	0	1	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	t0023	2367	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF442_chr19_12340944_12370683	1/0	t0001	4391	86	10	10	46	2	17	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/1	t0002	4392	47	15	11	12	4	4	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0003	4391	36	13	6	10	0	7	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0004	4391	23	0	13	0	5	5	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0005	4392	12	1	5	4	2	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0006	4393	10	2	2	4	1	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0007	4391	8	7	1	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0008	4391	7	0	0	7	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0009	4378	7	7	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0010	4390	6	5	0	1	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0011	4382	5	5	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0012	4391	4	4	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0013	4384	4	4	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0014	4391	4	4	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0015	4392	4	0	0	4	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0016	4392	3	3	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0017	4392	2	0	0	2	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0018	4392	2	0	0	2	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0019	4384	2	2	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683