JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF442_chr19_12340944_12370683	0/0	t0020	4384	2	1	1	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0021	4390	1	0	0	1	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0022	4391	1	0	0	1	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0023	4382	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0024	4390	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0025	4390	1	0	1	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0026	4390	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0027	4390	1	0	0	1	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0028	4391	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0029	4391	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0030	4391	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0031	4391	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0032	4391	1	0	0	1	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0033	4391	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0034	4391	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0035	4391	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0036	4392	1	0	0	1	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0037	4392	1	0	0	1	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0038	4392	1	0	1	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0039	4392	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0040	4392	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0041	4392	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0042	4393	1	0	1	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0043	4393	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0044	4393	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0045	4383	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	t0046	4384	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF443_chr19_12424706_12446021	1/1	t0001	558	172	38	26	91	3	12	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0002	558	137	29	19	70	2	17	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0003	558	61	8	22	23	5	3	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0004	558	17	9	1	0	1	6	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0005	558	6	6	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0006	558	3	0	1	0	1	1	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0007	588	3	0	0	0	0	3	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0008	558	3	0	0	3	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0009	558	2	2	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0010	558	2	1	1	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0011	558	2	0	2	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0012	558	1	0	0	1	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	t0013	558	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF444_chr19_56136287_56165893	1/1	t0001	960	193	21	63	67	13	27	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0002	960	75	2	14	57	0	2	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0003	960	66	8	2	48	1	7	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0004	960	35	34	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0005	980	10	10	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0006	960	9	4	1	1	2	1	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0007	960	5	0	0	5	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0008	960	4	3	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0009	957	3	3	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	t0010	960	2	2	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893