JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF445_chr3_44426705_44482670	0/0	t0039	15220	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0040	15218	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0041	15213	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0042	15219	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0043	15218	1	0	0	0	1	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0044	15222	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0045	15223	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0046	15221	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0047	15215	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0048	15220	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0049	15220	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0050	15216	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0051	15214	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0052	15211	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0053	15218	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	1/0	t0054	15219	1	0	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0055	15207	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0056	15223	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0057	15219	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0058	15219	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0059	15215	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0060	15213	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0061	15211	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0062	15208	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0063	15216	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0064	15221	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0065	15226	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0066	15217	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0067	15215	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0068	15216	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0069	15215	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0070	15215	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0071	15218	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0072	15224	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0073	15222	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0074	15230	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0075	15226	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0076	15220	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0077	15220	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0078	15221	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0079	15219	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0080	15217	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0081	15219	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0082	15224	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0083	15222	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0084	15220	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0085	15224	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0086	15226	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0087	15220	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0088	15222	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670