JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF445_chr3_44426705_44482670	0/0	t0089	15218	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0090	15217	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0091	15226	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0092	15220	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0093	15222	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0094	15223	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0095	15220	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0096	15215	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0097	15222	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0098	15225	1	0	0	0	1	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0099	15221	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0100	15221	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0101	15216	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0102	15217	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0103	15218	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0104	15218	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0105	15221	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0106	15220	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0107	15224	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0108	15219	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0109	15218	1	0	0	0	1	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0110	15218	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0111	15216	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0112	15221	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0113	15229	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0114	15234	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0115	15230	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0116	15228	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0117	15226	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0118	15221	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0119	15225	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0120	15223	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0121	15224	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0122	15224	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0123	15224	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0124	15222	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0125	15230	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0126	15227	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0127	15221	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0128	15222	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0129	15216	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0130	15226	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0131	15222	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0132	15227	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0133	15226	1	0	0	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0134	15225	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0135	15210	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0136	15210	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0137	15226	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	t0138	15226	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670