JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF451_chr6_57085188_57175305	1/1	t0001	1903	101	31	26	29	6	7	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	t0002	1898	39	10	9	14	2	4	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	t0003	1903	33	14	6	9	2	2	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	t0004	1898	9	9	0	0	0	0	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	t0005	1903	6	5	1	0	0	0	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	t0006	1903	2	0	2	0	0	0	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	t0007	1898	2	2	0	0	0	0	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	t0008	1903	1	1	0	0	0	0	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	t0009	1903	1	0	0	0	0	1	copy fasta	ZNF451	chr6	57085188	57175305
ZNF454_chr5_178936198_178971433	0/1	t0001	815	178	34	20	102	10	11	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	1/0	t0002	815	130	47	31	25	5	21	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	t0003	815	62	1	3	49	0	9	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	t0004	815	14	1	9	0	1	3	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	t0005	815	13	0	7	6	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	t0006	815	4	0	0	4	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	t0007	815	3	0	0	3	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	t0008	815	1	1	0	0	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	t0009	815	1	0	0	1	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF45_chr19_43907624_43940282	0/0	t0001	1878	116	17	25	71	0	3	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0002	1877	97	14	24	43	8	8	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/1	t0003	1878	62	13	16	21	3	8	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0004	1878	43	5	4	30	1	3	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0005	1877	20	10	1	4	1	4	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0006	1878	7	1	2	0	1	3	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0007	1877	6	3	0	0	1	2	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0008	1878	6	0	1	4	0	1	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0009	1878	4	4	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0010	1877	3	3	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0011	1877	3	0	1	0	1	1	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0012	1877	3	3	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0013	1878	3	2	1	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0014	1878	2	2	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0015	1877	2	2	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0016	1877	2	2	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0017	1878	2	2	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0018	1878	2	2	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0019	1878	2	2	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0020	1878	2	2	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0021	1878	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	1/0	t0022	1878	1	0	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0023	1877	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0024	1877	1	0	1	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0025	1878	1	0	0	1	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0026	1878	1	0	0	0	0	1	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0027	1878	1	0	0	1	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0028	1878	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0029	1878	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0030	1878	1	0	0	0	0	1	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0031	1878	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	t0032	1878	1	0	0	1	0	0	copy fasta	ZNF45	chr19	43907624	43940282