JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF45_chr19_43907624_43940282	0/0	t0033	1878	1	0	0	0	0	1	copy fasta	ZNF45	chr19	43907624	43940282
ZNF460_chr19_57275485_57299069	1/1	t0001	2162	255	51	32	133	9	28	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0002	2161	78	6	22	41	3	6	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0003	2162	60	31	17	1	4	7	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0004	2163	17	0	7	10	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0005	2162	7	6	1	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0006	2162	2	2	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0007	2161	2	0	2	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0008	2161	2	0	0	2	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0009	2162	2	0	0	2	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0010	2162	2	0	0	2	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0011	2162	2	0	0	2	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0012	2162	2	0	0	2	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0013	2161	1	0	0	0	0	1	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0014	2163	1	0	0	1	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0015	2161	1	1	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0016	2161	1	0	0	1	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0017	2161	1	0	0	0	0	1	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0018	2162	1	0	1	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0019	2162	1	0	0	0	0	1	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0020	2162	1	0	0	1	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	t0021	2161	1	1	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF461_chr19_36631618_36671837	0/1	t0001	2264	232	56	40	109	7	19	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	1/0	t0002	2264	97	22	25	30	6	13	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0003	2263	6	0	5	0	0	1	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0004	2264	3	3	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0005	2264	3	3	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0006	2264	2	0	2	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0007	2264	2	0	2	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0008	2263	1	0	0	0	1	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0009	2264	1	1	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0010	2264	1	0	0	0	0	1	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0011	2264	1	0	0	1	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0012	2263	1	1	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0013	2263	1	1	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0014	2264	1	0	0	0	0	1	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0015	2263	1	0	0	0	0	1	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	t0016	2264	1	1	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF462_chr9_106858166_107018634	0/0	t0001	2826	37	5	0	30	1	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	1/0	t0002	2825	30	5	9	8	2	5	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/1	t0003	2816	17	12	4	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0004	2826	11	10	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0005	2822	10	9	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0006	2825	7	1	0	5	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0007	2824	5	0	0	4	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0008	2825	5	0	0	5	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0009	2823	5	3	2	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0010	2824	4	4	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0011	2826	4	0	0	3	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0012	2827	4	0	0	3	0	1	copy fasta	ZNF462	chr9	106858166	107018634