JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF462_chr9_106858166_107018634	0/0	t0013	2825	4	4	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0014	2822	4	4	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0015	2823	3	1	0	0	2	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0016	2826	3	0	1	2	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0017	2826	3	0	0	3	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0018	2825	3	0	1	1	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0019	2823	2	2	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0020	2822	2	2	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0021	2823	2	2	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0022	2827	2	2	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0023	2816	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0024	2825	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0025	2826	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0026	2816	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0027	2815	1	0	0	0	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0028	2816	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0029	2816	1	0	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0030	2828	1	0	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0031	2827	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0032	2826	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0033	2828	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0034	2827	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0035	2828	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0036	2835	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0037	2821	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0038	2822	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0039	2824	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0040	2824	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0041	2824	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0042	2824	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0043	2825	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0044	2825	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0045	2822	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0046	2825	1	0	0	0	1	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	t0047	2826	1	0	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF467_chr7_149759182_149778588	1/0	t0001	1056	238	34	59	97	14	33	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0002	1051	81	29	12	34	2	4	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0003	1056	28	6	0	14	1	7	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/1	t0004	1046	20	12	3	3	1	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0005	1051	7	7	0	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0006	1051	5	4	1	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0007	1056	5	1	1	2	0	1	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0008	1046	3	0	0	3	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0009	1056	2	0	0	2	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0010	1051	1	0	1	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0011	1056	1	0	1	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0012	1056	1	1	0	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0013	1056	1	0	0	0	0	1	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	t0014	1056	1	0	0	1	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF468_chr19_52833010_52862619	1/0	t0001	2837	113	6	17	75	4	10	copy fasta	ZNF468	chr19	52833010	52862619