JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C2CD4A_chr15_62061977_62075917	0/0	t0021	2342	1	1	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	t0022	2339	1	0	0	0	0	1	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4B_chr15_62158535_62170285	1/1	t0001	487	336	84	57	146	9	38	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	t0002	487	81	7	11	50	5	8	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	t0003	487	8	7	1	0	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	t0004	487	3	0	3	0	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	t0005	487	2	0	0	2	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	t0006	487	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	t0007	487	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4C_chr19_400445_414147	0/1	t0001	1834	37	2	19	5	2	8	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0002	1834	14	0	0	11	0	3	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0003	1834	13	1	1	11	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0004	1837	12	12	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0005	1839	10	0	0	10	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0006	1834	9	0	3	6	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0007	1834	9	0	0	8	0	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0008	1839	7	0	1	6	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0009	1834	7	1	0	5	0	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0010	1839	6	0	0	6	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0011	1837	6	0	0	6	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0012	1834	5	2	2	0	1	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0013	1839	5	0	2	2	1	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0014	1834	5	1	0	2	0	2	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0015	1834	5	4	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0016	1834	4	0	4	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0017	1834	4	0	4	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0018	1839	4	0	4	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0019	1834	4	4	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0020	1834	4	0	0	4	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0021	1834	4	0	2	0	1	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	1/0	t0022	1834	3	0	1	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0023	1834	3	1	1	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0024	1839	3	0	0	3	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0025	1834	3	0	1	0	1	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0026	1834	2	0	2	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0027	1839	2	0	0	2	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0028	1834	2	0	0	0	0	2	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0029	1834	2	0	0	0	0	2	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0030	1834	2	2	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0031	1834	2	2	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0032	1837	2	2	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0033	1834	2	2	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0034	1835	2	0	1	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0035	1834	2	1	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0036	1834	2	0	1	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0037	1834	2	0	0	1	0	1	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0038	1834	2	2	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0039	1834	2	0	0	2	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0040	1834	2	2	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	t0041	1834	2	2	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147