JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF469_chr16_88377959_88445753	0/0	t0008	1909	5	2	0	3	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0009	1935	5	0	2	0	0	3	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0010	1936	4	4	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0011	1909	3	3	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	1/0	t0012	1909	3	2	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0013	1910	2	0	1	0	1	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0014	1909	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0015	1935	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0016	1896	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0017	1935	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0018	1908	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0019	1909	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0020	1909	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0021	1909	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0022	1909	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0023	1909	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0024	1909	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0025	1909	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0026	1909	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0027	1936	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0028	1935	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0029	1935	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0030	1936	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0031	1908	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0032	1908	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0033	1909	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0034	1910	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0035	1910	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0036	1937	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0037	1935	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0038	1936	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0039	1935	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0040	1935	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0041	1936	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0042	1935	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0043	1910	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0044	1934	1	0	0	0	1	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0045	1909	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	t0046	1909	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF470_chr19_56562468_56587894	1/0	t0001	5041	98	8	20	52	2	15	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0002	5038	71	31	5	31	0	4	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/1	t0003	5039	66	3	19	29	7	7	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0004	5041	47	7	12	15	3	10	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0005	5040	34	10	1	18	0	5	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0006	5040	11	0	1	10	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0007	5043	11	4	4	0	0	3	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0008	5041	9	0	0	9	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0009	5041	6	0	0	6	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0010	5041	5	5	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0011	5038	5	5	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894