JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF470_chr19_56562468_56587894	0/0	t0012	5041	4	0	1	0	2	1	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0013	5043	3	1	1	0	1	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0014	5041	3	2	1	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0015	5041	3	3	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0016	5040	3	3	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0017	5041	3	0	3	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0018	5039	3	0	2	0	0	1	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0019	5038	2	2	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0020	5040	2	0	0	0	2	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0021	5041	2	0	0	2	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0022	5038	2	2	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0023	5039	2	0	2	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0024	5039	1	0	1	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0025	5043	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0026	5042	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0027	5041	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0028	5041	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0029	5042	1	0	1	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0030	5041	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0031	5041	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0032	5041	1	0	0	0	1	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0033	5043	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0034	5043	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0035	5038	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0036	5038	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0037	5039	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0038	5039	1	0	1	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0039	5041	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0040	5039	1	0	1	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0041	5039	1	0	0	0	0	1	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0042	5038	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0043	5042	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0044	5041	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0045	5041	1	0	0	0	0	1	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0046	5043	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0047	5043	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	t0048	5040	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF471_chr19_56502855_56535212	0/0	t0001	4386	124	30	16	66	2	10	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	1/0	t0002	4386	91	1	20	56	1	12	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/1	t0003	4392	41	0	17	15	1	7	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0004	4394	39	19	1	15	1	3	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0005	4392	26	5	1	17	1	2	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0006	4386	16	14	2	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0007	4395	12	0	6	0	2	4	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0008	4386	6	5	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0009	4392	4	4	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0010	4386	3	0	0	3	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0011	4394	3	0	3	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0012	4394	3	3	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0013	4392	2	2	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212