JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF471_chr19_56502855_56535212	0/0	t0014	4392	2	0	0	0	2	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0015	4392	2	0	0	0	0	2	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0016	4392	2	2	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0017	4392	2	0	0	2	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0018	4395	2	1	0	0	0	1	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0019	4394	2	0	1	0	1	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0020	4395	2	0	2	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0021	4392	2	1	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0022	4386	1	0	0	0	0	1	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0023	4392	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0024	4392	1	0	0	1	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0025	4392	1	0	0	0	0	1	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0026	4392	1	0	0	0	0	1	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0027	4392	1	0	0	0	0	1	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0028	4386	1	0	0	1	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0029	4386	1	0	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0030	4386	1	0	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0031	4386	1	0	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0032	4386	1	0	0	1	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0033	4386	1	0	0	0	1	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0034	4386	1	0	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0035	4369	1	0	0	0	0	1	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0036	4386	1	0	0	1	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0037	4386	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0038	4386	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0039	4386	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0040	4392	1	0	0	1	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0041	4392	1	0	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0042	4392	1	0	0	1	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0043	4392	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0044	4386	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0045	4392	1	0	0	1	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0046	4386	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	t0047	4392	1	0	0	1	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF473_chr19_50021005_50053776	1/1	t0001	2027	375	73	62	185	11	42	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0002	2031	22	19	3	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0003	2027	4	4	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0004	2027	3	0	0	3	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0005	2027	2	0	0	0	1	1	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0006	2027	2	0	0	0	0	2	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0007	2031	1	1	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0008	2027	1	0	0	1	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0009	2027	1	0	1	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0010	2027	1	1	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0011	2027	1	0	0	1	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0012	2027	1	0	0	1	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0013	2027	1	0	0	0	0	1	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	t0014	2027	1	0	0	1	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF474_chr5_122124546_122158569	1/0	t0001	835	222	53	45	91	8	24	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/1	t0002	835	99	22	12	48	3	13	copy fasta	ZNF474	chr5	122124546	122158569