JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF474_chr5_122124546_122158569	0/0	t0003	835	35	14	2	19	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0004	835	11	1	8	0	1	1	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0005	835	3	1	1	0	0	1	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0006	835	2	0	0	2	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0007	835	2	0	0	0	0	2	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0008	835	2	2	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0009	835	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0010	835	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0011	835	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0012	835	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0013	835	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0014	835	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0015	835	1	0	0	0	0	1	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0016	835	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0017	835	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	t0018	835	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF479_chr7_57112676_57137436	1/0	t0001	2277	129	38	27	38	8	17	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/1	t0002	2281	109	4	27	57	5	15	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0003	2277	47	6	6	28	0	7	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0004	2281	43	0	1	42	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0005	2277	34	1	1	30	0	2	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0006	2277	12	11	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0007	2277	6	6	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0008	2277	6	6	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0009	2277	6	5	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0010	2277	5	5	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0011	2277	4	1	2	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0012	2281	3	0	0	3	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0013	2277	3	2	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0014	2281	3	3	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0015	2277	2	0	0	2	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0016	2277	2	2	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0017	2281	2	0	0	0	0	2	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0018	2283	2	2	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0019	2277	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0020	2277	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0021	2277	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0022	2277	1	0	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0023	2277	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0024	2277	1	0	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0025	2281	1	0	0	0	1	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0026	2281	1	0	0	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0027	2281	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0028	2281	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0029	2277	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0030	2277	1	0	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0031	2277	1	0	0	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	t0032	2277	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF480_chr19_52292169_52330922	0/1	t0001	3139	186	47	41	74	6	17	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	1/0	t0002	3139	116	1	21	78	3	12	copy fasta	ZNF480	chr19	52292169	52330922