JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF480_chr19_52292169_52330922	0/0	t0003	3139	32	22	7	2	0	1	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0004	3128	9	2	4	0	0	3	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0005	3128	5	0	3	0	2	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0006	3139	5	4	1	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0007	3128	4	4	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0008	3139	3	3	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0009	3139	2	2	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0010	3139	2	0	0	0	1	1	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0011	3139	2	2	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0012	3139	1	0	1	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0013	3139	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0014	3139	1	0	0	0	0	1	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0015	3139	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0016	3139	1	0	0	0	0	1	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0017	3139	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0018	3139	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0019	3139	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0020	3139	1	0	0	1	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0021	3139	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0022	3139	1	0	0	1	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	t0023	3139	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF483_chr9_111520179_111560417	1/0	t0001	12460	59	0	9	41	0	8	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0002	12453	30	2	6	19	1	2	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0003	12453	25	0	0	18	1	6	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0004	12460	24	0	2	20	1	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0005	12457	16	3	5	0	2	6	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0006	12461	8	0	2	5	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0007	12454	8	1	2	5	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0008	12452	8	0	1	7	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/1	t0009	12458	8	1	3	0	2	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0010	12453	7	0	0	7	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0011	12459	7	7	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0012	12465	7	7	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0013	12457	7	7	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0014	12458	5	5	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0015	12459	5	5	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0016	12453	5	4	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0017	12459	5	2	2	0	1	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0018	12459	5	5	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0019	12453	5	0	0	4	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0020	12455	5	0	0	4	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0021	12456	5	0	0	5	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0022	12453	4	0	0	4	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0023	12454	4	0	0	3	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0024	12457	4	0	2	0	0	2	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0025	12458	4	4	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0026	12460	3	0	3	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0027	12460	3	0	0	0	0	3	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0028	12460	3	0	1	0	2	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0029	12453	3	3	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417