JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF483_chr9_111520179_111560417	0/0	t0030	12453	3	2	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0031	12458	3	2	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0032	12462	3	0	3	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0033	12460	3	3	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0034	12456	3	1	0	2	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0035	12454	3	0	0	3	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0036	12457	2	2	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0037	12458	2	0	0	2	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0038	12460	2	0	0	2	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0039	12455	2	0	1	0	1	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0040	12461	2	0	0	2	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0041	12454	2	0	2	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0042	12453	2	0	0	2	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0043	12460	2	0	0	0	0	2	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0044	12460	2	2	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0045	12460	2	2	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0046	12464	2	1	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0047	12454	2	0	0	2	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0048	12452	2	0	0	2	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0049	12457	2	2	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0050	12458	2	0	0	0	1	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0051	12457	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0052	12459	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0053	12461	1	0	0	0	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0054	12460	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0055	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0056	12458	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0057	12460	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0058	12460	1	0	0	0	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0059	12459	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0060	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0061	12460	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0062	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0063	12454	1	0	0	0	1	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0064	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0065	12461	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0066	12461	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0067	12459	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0068	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0069	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0070	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0071	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0072	12461	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0073	12462	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0074	12462	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0075	12463	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0076	12453	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0077	12453	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0078	12453	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0079	12455	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417