JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF483_chr9_111520179_111560417	0/0	t0080	12454	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0081	12456	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0082	12456	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0083	12453	1	0	0	0	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0084	12455	1	0	0	0	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0085	12457	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0086	12459	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0087	12461	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0088	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0089	12458	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0090	12459	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0091	12460	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0092	12461	1	0	0	0	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0093	12462	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0094	12460	1	0	0	0	1	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0095	12458	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0096	12461	1	0	0	0	1	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0097	12459	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0098	12458	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0099	12458	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0100	12465	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0101	12457	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0102	12459	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0103	12453	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0104	12453	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0105	12453	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0106	12455	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0107	12453	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0108	12453	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0109	12454	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0110	12453	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0111	12454	1	0	0	0	1	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0112	12455	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0113	12454	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0114	12455	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0115	12458	1	0	0	0	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0116	12457	1	0	0	0	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0117	12459	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0118	12459	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0119	12458	1	0	1	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0120	12458	1	0	0	0	0	1	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0121	12460	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	t0122	12458	1	1	0	0	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF484_chr9_92839182_92883038	0/0	t0001	2226	139	27	27	63	7	15	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/1	t0002	2226	127	16	4	86	5	15	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	1/0	t0003	2226	95	13	21	47	2	11	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0004	2226	18	16	2	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0005	2226	11	7	4	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0006	2226	4	0	0	3	0	1	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0007	2226	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038