JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF484_chr9_92839182_92883038	0/0	t0008	2226	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0009	2226	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0010	2226	1	1	0	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0011	2226	1	0	1	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0012	2226	1	0	1	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0013	2226	1	1	0	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	t0014	2226	1	1	0	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF485_chr10_43601438_43622904	1/1	t0001	699	410	74	75	198	15	46	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	t0002	699	16	14	2	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	t0003	699	10	5	3	0	1	1	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	t0004	699	3	3	0	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	t0005	699	1	1	0	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	t0006	699	1	0	0	0	0	1	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	t0007	699	1	1	0	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF486_chr19_20162214_20205488	0/0	t0001	2504	135	24	18	78	1	14	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	1/1	t0002	2504	127	9	30	58	9	19	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0003	2503	24	23	1	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0004	2504	24	0	4	7	1	12	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0005	2503	13	7	4	0	0	2	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0006	2504	11	9	2	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0007	2504	11	0	5	5	1	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0008	2499	5	5	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0009	2504	4	0	0	4	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0010	2504	3	0	0	3	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0011	2821	3	3	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0012	2504	2	2	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0013	2516	1	0	0	1	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0014	2504	1	0	1	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0015	2504	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0016	2503	1	0	0	1	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0017	2504	1	0	0	1	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0018	2504	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0019	2504	1	0	1	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0020	2504	1	0	0	1	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0021	2504	1	0	0	1	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0022	2504	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0023	2504	1	0	0	1	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0024	2504	1	0	1	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0025	2504	1	0	0	0	0	1	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0026	2503	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0027	2822	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0028	2820	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0029	2503	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0030	2504	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0031	2504	1	0	0	1	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	t0032	2504	1	0	1	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF487_chr10_43432111_43488181	1/0	t0001	1505	175	62	30	56	4	22	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/1	t0002	1505	125	8	35	66	11	4	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	t0003	1505	16	14	2	0	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	t0004	1505	10	0	1	6	1	2	copy fasta	ZNF487	chr10	43432111	43488181