JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF487_chr10_43432111_43488181	0/0	t0005	1505	4	4	0	0	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	t0006	1505	1	0	0	1	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	t0007	1505	1	0	0	1	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF488_chr10_47360496_47389293	1/1	t0001	2494	303	51	52	156	8	34	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0002	2494	84	13	8	50	4	9	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0003	2494	11	10	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0004	2494	8	6	2	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0005	2492	5	1	1	0	2	1	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0006	2494	3	2	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0007	2494	2	2	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0008	2494	2	0	0	2	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0009	2494	2	1	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0010	2494	2	2	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0011	2494	2	0	2	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0012	2494	2	2	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0013	2494	1	0	0	0	1	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0014	2494	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0015	2494	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0016	2494	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0017	2494	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0018	2494	1	0	0	0	1	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0019	2494	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0020	2494	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0021	2494	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0022	2494	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0023	2494	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0024	2494	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0025	2494	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0026	2494	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0027	2494	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0028	2494	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0029	2494	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	t0030	2494	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF48_chr16_30390420_30405108	0/0	t0001	1176	253	52	49	111	10	31	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	1/1	t0002	1176	56	3	22	20	2	7	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0003	1176	29	24	3	0	1	1	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0004	1176	5	0	3	2	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0005	1176	2	2	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0006	1176	2	0	0	0	0	2	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0007	1176	1	0	0	0	1	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0008	1176	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0009	1176	1	0	0	0	0	1	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0010	1176	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0011	1176	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0012	1176	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0013	1176	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0014	1176	1	0	0	1	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	t0015	1176	1	0	1	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF490_chr19_12571100_12615813	0/0	t0001	4497	59	14	16	21	1	7	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	1/0	t0002	4519	56	1	9	36	1	8	copy fasta	ZNF490	chr19	12571100	12615813