JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF490_chr19_12571100_12615813	0/1	t0003	4519	40	7	17	4	8	3	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0004	4519	28	0	8	11	2	7	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0005	4497	11	0	0	9	0	2	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0006	4520	10	8	1	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0007	4521	9	9	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0008	4519	8	0	0	8	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0009	4520	8	0	1	4	0	3	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0010	4498	6	1	1	2	0	2	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0011	4525	5	5	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0012	4497	5	5	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0013	4520	5	0	3	1	1	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0014	4497	5	0	0	5	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0015	4524	4	4	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0016	4496	4	2	1	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0017	4497	4	4	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0018	4519	4	0	0	4	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0019	4519	3	0	0	3	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0020	4518	3	0	0	3	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0021	4518	3	0	0	3	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0022	4497	3	3	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0023	4521	3	0	1	2	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0024	4497	3	0	0	3	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0025	4519	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0026	4520	2	1	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0027	4521	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0028	4522	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0029	4525	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0030	4520	2	0	0	2	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0031	4518	2	0	2	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0032	4519	2	0	0	2	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0033	4497	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0034	4496	2	0	0	1	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0035	4519	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0036	4498	2	1	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0037	4497	2	1	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0038	4497	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0039	4521	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0040	4520	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0041	4519	1	0	0	0	1	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0042	4518	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0043	4517	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0044	4517	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0045	4522	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0046	4520	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0047	4519	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0048	4519	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0049	4519	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0050	4520	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0051	4519	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0052	4519	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813