JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF490_chr19_12571100_12615813	0/0	t0053	4519	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0054	4519	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0055	4518	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0056	4519	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0057	4521	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0058	4520	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0059	4521	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0060	4520	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0061	4519	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0062	4519	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0063	4498	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0064	4520	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0065	4525	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0066	4520	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0067	4496	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0068	4496	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0069	4517	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0070	4497	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0071	4519	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0072	4497	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0073	4497	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0074	4497	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0075	4496	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0076	4519	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0077	4497	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0078	4519	1	0	0	0	0	1	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0079	4498	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0080	4498	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0081	4499	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0082	4498	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0083	4498	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0084	4499	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0085	4519	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0086	4524	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0087	4519	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	t0088	4498	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF491_chr19_11793523_11813503	1/1	t0001	1575	181	16	43	95	12	13	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0002	1575	95	23	10	57	0	5	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0003	1574	67	27	16	10	6	8	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0004	1575	22	7	3	12	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0005	1575	3	1	0	2	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0006	1575	3	0	0	3	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0007	1575	2	2	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0008	1575	2	0	1	0	0	1	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0009	1574	2	2	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0010	1575	2	2	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0011	1576	2	0	1	0	0	1	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0012	1575	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0013	1574	1	1	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0014	1574	1	1	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503