JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF491_chr19_11793523_11813503	0/0	t0015	1575	1	1	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0016	1575	1	0	1	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0017	1576	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0018	1575	1	1	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0019	1575	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	t0020	1575	1	0	1	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF492_chr19_22629324_22672671	1/1	t0001	2651	161	17	35	80	8	19	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0002	2650	47	11	12	21	1	2	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0003	2653	39	4	8	21	2	4	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0004	2653	20	2	3	15	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0005	2651	17	15	2	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0006	2654	12	12	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0007	2653	9	8	1	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0008	2654	8	8	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0009	2650	5	0	0	5	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0010	2651	5	0	0	5	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0011	2651	5	5	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0012	2655	4	4	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0013	2649	4	0	0	0	0	4	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0014	2653	3	0	0	3	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0015	2651	2	2	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0016	2651	2	2	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0017	2652	2	0	0	2	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0018	2653	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0019	2653	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0020	2653	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0021	2653	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0022	2653	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0023	2654	1	0	1	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0024	2654	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0025	2650	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0026	2651	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0027	2650	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0028	2650	1	0	1	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0029	2651	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0030	2651	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0031	2651	1	0	0	0	1	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0032	2651	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0033	2651	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0034	2651	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0035	2650	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0036	2652	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0037	2653	1	0	1	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	t0038	2653	1	0	0	0	0	1	copy fasta	ZNF492	chr19	22629324	22672671
ZNF493_chr19_21392133_21432577	0/0	t0001	2699	175	46	29	67	10	23	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0002	2695	43	3	4	30	2	4	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0003	2694	37	5	14	11	1	6	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0004	2697	31	1	10	14	2	4	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0005	2694	16	12	1	2	0	1	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/1	t0006	2697	6	0	3	0	2	0	copy fasta	ZNF493	chr19	21392133	21432577