JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF493_chr19_21392133_21432577	0/0	t0007	2695	4	0	0	4	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0008	2695	4	0	0	4	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0009	2696	4	4	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0010	2695	3	3	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0011	2695	3	3	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0012	2695	3	2	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0013	2697	3	3	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0014	3835	2	0	0	2	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0015	2699	2	0	1	0	0	1	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0016	2699	2	0	0	2	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	1/0	t0017	2699	2	0	0	1	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0018	2699	2	0	0	2	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0019	2694	1	0	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0020	2694	1	0	0	0	1	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0021	2694	1	0	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0022	2694	1	0	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0023	2694	1	0	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0024	2695	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0025	2695	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0026	2695	1	0	0	1	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0027	2695	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0028	2695	1	0	0	1	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0029	2699	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0030	2699	1	0	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0031	2697	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0032	2699	1	0	0	1	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0033	2699	1	0	0	1	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0034	2699	1	0	0	1	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0035	2699	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	t0036	2699	1	0	0	0	0	1	copy fasta	ZNF493	chr19	21392133	21432577
ZNF496_chr1_247292415_247336867	0/0	t0001	3552	109	6	24	62	4	13	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0002	3549	105	11	19	58	4	13	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/1	t0003	3552	55	13	9	15	7	10	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	1/0	t0004	3552	32	23	6	1	0	1	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0005	3552	13	7	5	0	0	1	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0006	3552	8	6	2	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0007	3552	7	6	1	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0008	3552	5	5	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0009	3552	5	5	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0010	3552	2	0	1	0	0	1	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0011	3552	1	0	0	0	0	1	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0012	3552	1	0	1	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0013	3552	1	1	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0014	3549	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0015	3549	1	0	0	0	1	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0016	3552	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0017	3552	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0018	3552	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0019	3549	1	1	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	t0020	3549	1	1	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867