JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF496_chr1_247292415_247336867	0/0	t0021	3552	1	1	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF497_chr19_58349357_58367751	0/1	t0001	1969	202	24	46	104	11	16	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	1/0	t0002	1969	146	51	23	38	7	26	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0003	1969	20	0	0	20	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0004	1969	10	1	9	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0005	1969	6	1	4	0	0	1	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0006	1969	5	5	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0007	1967	5	5	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0008	1969	4	0	0	4	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0009	1969	2	2	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0010	1967	2	2	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0011	1969	2	0	0	2	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0012	1969	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0013	1969	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0014	1967	1	0	1	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0015	1969	1	0	0	0	0	1	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0016	1969	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	t0017	1969	1	0	1	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF500_chr16_4743239_4772162	0/0	t0001	4379	146	2	38	81	10	15	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	1/1	t0002	4382	80	18	14	34	2	10	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0003	4383	29	13	1	14	0	1	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0004	4379	25	18	1	6	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0005	4382	11	4	2	0	1	4	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0006	4380	9	0	1	4	0	4	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0007	4379	7	1	1	0	0	5	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0008	4384	6	5	0	0	0	1	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0009	4382	4	0	2	1	1	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0010	4382	4	2	1	0	0	1	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0011	4379	4	4	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0012	4379	4	0	4	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0013	4383	3	1	1	0	0	1	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0014	4381	3	1	0	2	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0015	4382	3	0	0	3	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0016	4380	3	0	0	2	0	1	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0017	4379	3	0	0	3	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0018	4383	2	0	1	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0019	4379	2	0	2	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0020	4382	2	2	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0021	4382	2	0	0	2	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0022	4381	2	0	0	2	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0023	4380	2	2	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0024	4379	2	0	0	2	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0025	4379	2	0	0	2	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0026	4379	2	0	0	2	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0027	4380	2	0	0	2	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0028	4379	2	0	1	0	1	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0029	4379	1	0	0	0	1	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0030	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0031	4383	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0032	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162