JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF500_chr16_4743239_4772162	0/0	t0033	4382	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0034	4383	1	0	0	0	1	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0035	4382	1	0	0	0	0	1	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0036	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0037	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0038	4382	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0039	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0040	4383	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0041	4383	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0042	4383	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0043	4383	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0044	4383	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0045	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0046	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0047	4382	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0048	4380	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0049	4383	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0050	4381	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0051	4380	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0052	4383	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0053	4384	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0054	4383	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0055	4380	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0056	4379	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0057	4380	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0058	4383	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0059	4382	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0060	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0061	4380	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0062	4379	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0063	4379	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0064	4379	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0065	4379	1	0	0	0	1	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0066	4381	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0067	4380	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0068	4379	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0069	4379	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0070	4379	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0071	4379	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0072	4379	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0073	4382	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	t0074	4382	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF501_chr3_44724635_44742083	0/1	t0001	2538	231	51	51	93	9	26	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	1/0	t0002	2538	86	23	18	25	4	15	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0003	2538	9	9	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0004	2538	6	6	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0005	2526	4	3	0	0	1	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0006	2538	3	3	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0007	2550	2	0	0	0	2	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0008	2538	1	0	0	1	0	0	copy fasta	ZNF501	chr3	44724635	44742083