JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF501_chr3_44724635_44742083	0/0	t0009	2538	1	0	0	0	0	1	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0010	2538	1	1	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0011	2538	1	0	1	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0012	2538	1	1	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0013	2538	1	1	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0014	2538	1	0	0	1	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0015	2538	1	0	1	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0016	2538	1	0	1	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0017	2538	1	0	0	0	0	1	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	t0018	2538	1	0	0	0	0	1	copy fasta	ZNF501	chr3	44724635	44742083
ZNF502_chr3_44707660_44728831	0/1	t0001	1522	163	18	33	79	6	26	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0002	1521	85	43	13	16	1	12	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0003	1521	25	1	9	15	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0004	1523	19	5	8	5	1	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0005	1522	17	9	4	1	2	1	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0006	1523	8	5	3	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0007	1523	7	1	1	1	3	1	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0008	1521	4	1	1	0	1	1	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0009	1520	4	2	1	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0010	1521	3	2	1	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0011	1520	3	2	1	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0012	1617	3	2	0	0	1	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0013	1522	3	3	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0014	1521	3	0	0	3	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0015	1523	2	2	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0016	1521	2	0	0	2	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0017	1521	2	0	0	0	0	2	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0018	1522	2	0	0	2	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0019	1523	1	1	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	1/0	t0020	1520	1	0	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0021	1522	1	0	1	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0022	1617	1	1	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0023	1522	1	0	0	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0024	1521	1	0	0	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0025	1522	1	0	0	0	1	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0026	1522	1	0	0	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	t0027	1522	1	0	0	0	0	1	copy fasta	ZNF502	chr3	44707660	44728831
ZNF503_chr10_75392830_75406764	1/1	t0001	1265	315	49	61	151	16	36	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0002	1265	17	14	2	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0003	1264	16	15	1	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0004	1266	10	6	2	2	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0005	1264	2	0	1	0	0	1	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0006	1289	2	2	0	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0007	1265	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0008	1265	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0009	1265	1	0	0	0	0	1	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0010	1265	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0011	1265	1	1	0	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0012	1265	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0013	1265	1	0	1	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764