JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF503_chr10_75392830_75406764	0/0	t0014	1264	1	1	0	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0015	1265	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	t0016	1265	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF506_chr19_19787711_19826750	0/1	t0001	1990	131	12	35	53	8	22	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0002	1990	99	12	13	63	1	10	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0003	1990	83	21	15	39	2	6	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0004	1990	43	14	1	21	0	7	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0005	1989	12	11	1	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0006	1990	10	7	2	0	1	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0007	1990	8	0	0	8	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0008	1990	7	5	2	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0009	1990	7	0	5	0	0	2	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0010	1990	3	0	0	0	0	3	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0011	1990	3	3	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0012	1990	2	2	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	1/0	t0013	1989	2	0	0	1	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0014	1990	2	2	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0015	1990	1	0	0	1	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0016	1989	1	0	0	1	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0017	1989	1	0	0	1	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0018	1990	1	1	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0019	1990	1	1	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	t0020	1990	1	1	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF507_chr19_32340610_32392667	0/0	t0001	4856	84	24	3	52	0	5	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/1	t0002	4856	75	10	17	27	8	12	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0003	4856	35	0	7	16	1	11	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0004	4856	34	0	5	24	2	3	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0005	4857	13	0	7	3	2	1	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0006	4852	12	0	12	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0007	4856	10	0	0	7	0	3	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0008	4856	9	4	3	0	1	1	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0009	4856	9	9	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0010	4856	8	3	1	4	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0011	4856	7	7	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0012	4856	6	0	1	5	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0013	4856	6	5	1	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0014	4856	6	6	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0015	4856	4	1	0	3	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0016	4856	4	4	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0017	4856	3	0	0	3	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0018	4856	3	3	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0019	4856	3	0	0	3	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0020	4856	3	3	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0021	4856	3	0	0	3	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0022	4854	3	3	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0023	4856	3	3	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0024	4856	2	2	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0025	4851	2	0	2	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0026	4856	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0027	4856	1	0	1	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667