JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF507_chr19_32340610_32392667	0/0	t0028	4856	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0029	4856	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0030	4851	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	1/0	t0031	4855	1	0	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0032	4856	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0033	4856	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0034	4856	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0035	4856	1	0	1	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0036	4856	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0037	4856	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0038	4855	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0039	4856	1	0	1	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0040	4851	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0041	4856	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	t0042	4857	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF510_chr9_96749553_96783087	1/1	t0001	4456	167	34	40	68	5	18	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0002	4456	43	0	0	42	0	1	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0003	4460	19	0	0	18	0	1	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0004	4456	9	9	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0005	4456	8	8	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0006	4445	6	6	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0007	4456	4	4	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0008	4456	4	2	1	1	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0009	4456	3	3	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0010	4456	3	3	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0011	4456	3	3	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0012	4456	3	3	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0013	4460	3	3	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0014	4460	2	2	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0015	4456	1	0	0	1	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0016	4456	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0017	4456	1	0	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0018	4456	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0019	4456	1	0	0	0	0	1	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0020	4456	1	0	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0021	4456	1	0	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0022	4456	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0023	4456	1	0	0	1	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0024	4456	1	0	0	0	0	1	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0025	4456	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0026	4456	1	0	0	0	1	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0027	4445	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0028	4445	1	0	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0029	4445	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0030	4460	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0031	4460	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0032	4460	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0033	4460	1	0	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0034	4456	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	t0035	4456	1	0	0	1	0	0	copy fasta	ZNF510	chr9	96749553	96783087