JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF511_chr10_133303914_133318161	1/1	t0001	326	278	90	58	81	16	31	copy fasta	ZNF511	chr10	133303914	133318161
ZNF511_chr10_133303914_133318161	0/0	t0002	326	2	2	0	0	0	0	copy fasta	ZNF511	chr10	133303914	133318161
ZNF511_chr10_133303914_133318161	0/0	t0003	326	1	0	0	0	0	1	copy fasta	ZNF511	chr10	133303914	133318161
ZNF511_chr10_133303914_133318161	0/0	t0004	326	1	0	0	1	0	0	copy fasta	ZNF511	chr10	133303914	133318161
ZNF512B_chr20_63951704_63974930	1/0	t0001	3304	217	40	31	121	11	13	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0002	3304	51	12	23	2	1	13	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/1	t0003	3304	47	15	14	5	2	10	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0004	3304	6	5	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0005	3304	6	0	0	0	0	6	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0006	3304	5	2	0	3	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0007	3304	2	2	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0008	3304	2	0	0	2	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0009	3304	2	0	0	2	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0010	3304	2	2	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0011	3309	2	0	0	1	0	1	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0012	3304	2	0	2	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0013	3304	2	1	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0014	3304	1	1	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0015	3304	1	0	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0016	3304	1	0	0	1	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0017	3304	1	0	0	0	0	1	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0018	3304	1	0	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0019	3309	1	1	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0020	3304	1	1	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0021	3304	1	0	0	0	0	1	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0022	3304	1	0	0	1	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	t0023	3304	1	0	0	0	0	1	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512_chr2_27578042_27628217	1/1	t0001	1828	220	52	45	90	11	20	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	t0002	1828	100	17	12	52	3	16	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	t0003	1828	4	3	1	0	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	t0004	1828	3	3	0	0	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	t0005	1828	2	2	0	0	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	t0006	1828	2	2	0	0	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	t0007	1828	1	1	0	0	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF513_chr2_27372235_27385734	1/0	t0001	519	237	53	33	115	9	26	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/1	t0002	519	100	22	28	27	5	17	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	t0003	519	11	0	0	11	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	t0004	519	5	4	1	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	t0005	519	2	0	2	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	t0006	519	1	0	0	0	0	1	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	t0007	519	1	0	1	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	t0008	519	1	1	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	t0009	519	1	0	0	1	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	t0010	519	1	0	1	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF514_chr2_95140000_95164848	0/1	t0001	4964	56	3	4	42	0	6	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0002	4940	34	18	9	1	1	5	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0003	4987	29	1	3	20	0	5	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0004	4963	25	8	3	9	1	4	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0005	4941	25	0	13	9	0	3	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0006	4964	19	9	1	8	1	0	copy fasta	ZNF514	chr2	95140000	95164848