JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF514_chr2_95140000_95164848	0/0	t0007	5010	10	2	1	6	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0008	4986	9	5	2	0	1	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0009	4987	9	0	4	3	0	2	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0010	4965	9	4	0	5	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0011	4962	8	4	0	3	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0012	4964	6	2	2	2	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0013	4988	6	0	1	5	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0014	5012	6	0	1	4	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0015	4988	6	1	0	4	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0016	4988	6	1	1	4	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0017	5034	5	0	4	0	1	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0018	5011	5	0	0	2	1	2	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0019	4941	5	0	3	1	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0020	4939	4	1	1	1	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0021	4965	4	0	1	3	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0022	4987	3	0	0	3	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0023	4983	3	0	0	0	2	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0024	5029	2	0	0	0	2	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0025	4963	2	2	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0026	5035	2	0	2	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0027	5005	2	0	0	0	2	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0028	4989	2	2	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0029	5011	2	1	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0030	4940	2	0	0	2	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0031	4964	2	0	1	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0032	4989	2	0	1	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0033	5012	2	0	0	2	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0034	4942	2	0	0	2	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0035	4941	2	0	0	2	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0036	4975	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0037	4987	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0038	5011	1	0	1	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0039	5010	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0040	5059	1	0	1	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0041	5011	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0042	4963	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0043	4963	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0044	5006	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0045	4939	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0046	4997	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0047	4963	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0048	4963	1	0	1	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0049	4963	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0050	4987	1	0	0	1	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0051	4987	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	1/0	t0052	4987	1	0	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0053	4983	1	0	0	0	1	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0054	5008	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0055	5035	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	t0056	4917	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848